Table 2

Statistics of NGen assembly (mt: mitochondrial DNA)

Gallus

Crocodylus

Elaphe

Pogona

Trachemys


Contigs generated

39,723

36,088

25,819

52,348

37,498

Contigs without mt

36,809 (92.7%)

34,013 (94.2%)

22,983 (89%)

48,838 (93.3%)

34,592 (92.2%)

Singletons

184,139

171,709

217,290

263,428

168,075

Singletons without mt

65,066 (35.3%)

77,684 (45.2%)

56,705 (26.1%)

85,666 (32.5%)

69,968 (41.6%)

Total

223,862

207,797

243,109

315,776

205,573

Total without mt

101,875 (46%)

111,697 (54%)

79,688 (33%)

134,504 (43%)

104,560 (51%)

Av. contig length

375

415

424

407

360

Max contig length

4,255

7,513

5,317

6,063

4,841

Cumul. contig length

15.0 Mb

15.2 Mb

10.1 Mb

21.6 Mb

13.8 Mb

Cumul. total length

48.2 Mb

39.9 Mb

53.9 Mb

69.0 Mb

37.6 Mb

Average reads/contig

9.5

9.6

13.2

11.9

11.9

Greater than 500 b

7,080

7,796

5,206

10,709

6,081

Greater than 1 Kb

1,570

1,805

1,269

2,792

1,386

Av. sequencing depth

3.2

2.9

3.1

3.7

3.2


Tzika et al. EvoDevo 2011 2:19   doi:10.1186/2041-9139-2-19

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